From 5341bec71f277447025dd9beb67a38d134d3dcc3 Mon Sep 17 00:00:00 2001
From: Aleksandr Shatrovskii <shatrale@fit.cvut.cz>
Date: Wed, 10 May 2017 03:29:45 +0200
Subject: [PATCH] Let aarbology know about new ExactSubtreeRepeats
---
aarbology2/src/aarbology.cpp | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/aarbology2/src/aarbology.cpp b/aarbology2/src/aarbology.cpp
index d3c492cdeb..fec5a8ec48 100644
--- a/aarbology2/src/aarbology.cpp
+++ b/aarbology2/src/aarbology.cpp
@@ -30,6 +30,7 @@
#include <arbology/exact/ExactTreePatternAutomaton.h>
#include <arbology/exact/ExactNonlinearTreePatternAutomaton.h>
#include <tree/properties/ExactSubtreeRepeatsNaive.h>
+#include <tree/properties/ExactSubtreeRepeats.h>
#include <arbology/transform/BeginToEndIndex.h>
#include <arbology/indexing/CompressedBitParallelIndexConstruction.h>
#include <arbology/indexing/FullAndLinearIndexConstruction.h>
@@ -59,6 +60,7 @@ int main ( int argc, char * argv[] ) {
allowed.push_back ( "nonlinearFullAndLinearIndex" );
allowed.push_back ( "exactSubtreeRepeatsNaive" );
+ allowed.push_back ( "exactSubtreeRepeats" );
allowed.push_back ( "badCharacterShiftTable" );
TCLAP::ValuesConstraint < std::string > allowedVals ( allowed );
@@ -260,6 +262,18 @@ int main ( int argc, char * argv[] ) {
measurements::end ( );
measurements::start ( "Output write", measurements::Type::AUXILIARY );
+ alib::XmlDataFactory::toStdout ( res );
+ } else if ( algorithm.getValue ( ) == "exactSubtreeRepeats" ) {
+ tree::Tree subject = alib::XmlDataFactory::fromTokens ( std::move ( sax::FromXMLParserHelper::parseInput(true, subjectInput).front ( ) ) );
+
+ measurements::end ( );
+ measurements::start ( "Algorithm", measurements::Type::MAIN );
+
+ tree::Tree res = tree::properties::ExactSubtreeRepeats::repeats ( subject );
+
+ measurements::end ( );
+ measurements::start ( "Output write", measurements::Type::AUXILIARY );
+
alib::XmlDataFactory::toStdout ( res );
} else if ( algorithm.getValue ( ) == "compressedBitParallelIndex" ) {
tree::RankedTreeWrapper subject = alib::XmlDataFactory::fromTokens ( std::move ( sax::FromXMLParserHelper::parseInput(true, subjectInput).front ( ) ) );
--
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