diff --git a/src/main/java/edu/cvut/fit/kw/vmm/backend/sequences_comparement/SmithWaterman.java b/src/main/java/edu/cvut/fit/kw/vmm/backend/sequences_comparement/SmithWaterman.java
index 79507f417154659d059160ee5ee453e55842bcdc..71544761b404898fb530365a77f22a454b7720c4 100644
--- a/src/main/java/edu/cvut/fit/kw/vmm/backend/sequences_comparement/SmithWaterman.java
+++ b/src/main/java/edu/cvut/fit/kw/vmm/backend/sequences_comparement/SmithWaterman.java
@@ -95,6 +95,8 @@ public class SmithWaterman extends AbstractSequenceComparator implements Sequenc
                     return operations;
             }
         }
+        xBeginning = x;
+        yBeginning = y;
         return operations;
     }
 }