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Commit 7115c414 authored by Ondřej Novák's avatar Ondřej Novák
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add web presentation

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web/img/A-baze.png 0 → 100644
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web/img/A-baze.png

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web/img/C-baze.png 0 → 100644
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web/img/C-baze.png

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web/img/DNA_acgt.jpg 0 → 100644
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web/img/DNA_acgt.jpg

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web/img/DNA_large.jpg

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web/img/G-baze.png

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web/img/T-baze.png

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web/img/false.png

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web/img/result.ico

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web/img/speed.png

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web/img/true.png

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web/index.php 0 → 100644
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<?php
// Počáteční hodnoty při prvním spuštění
$comments = "";
$result_picture = "type=\"image\" src=\"img/true.png\" name=\"result_img\" value=\"M\" width=\"30\" height=\"30\" style=\"display: none;\"";
$raw_string = "";
$baze_a = "0";
$baze_c = "0";
$baze_g = "0";
$baze_t = "0";
$speed = "100";
// Dosazení původních hodnot, aby nedocházelo k resetování formuláře
if (isset($_POST['StringInput']))
{
$raw_string = $_POST['StringInput'];
if (strpos($_POST['StringInput'],' ') !== false)
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Sekvence bází musí být zadána bez mezery!</font>";
}
else
{
$result_picture = "type=\"image\" src=\"img/true.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
}
}
if (isset($_FILES['fileToUpload']) && file_exists($_FILES['fileToUpload']['tmp_name']))
{
$extension = pathinfo($_FILES['fileToUpload']['name'], PATHINFO_EXTENSION);
if (1 || $extension == "ffn")
{
$result_picture = "type=\"image\" src=\"img/true.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
}
else
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Vstupní soubor musí být typu *.ffn!</font>";
}
}
if (isset($_POST['speed']))
{
$speed = $_POST['speed'];
if (!ctype_digit($_POST['speed']))
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Přesnost výpočtu musí být celé číslo!</font>";
}
}
if (isset($_POST['A-baze']))
{
$baze_a = $_POST['A-baze'];
if (!preg_match('/^-?[0-9]{1,4}$/', $_POST['A-baze']))
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Váha báze A musí být celé číslo!</font>";
}
}
if (isset($_POST['C-baze']))
{
$baze_c = $_POST['C-baze'];
if (!preg_match('/^-?[0-9]{1,4}$/', $_POST['C-baze']))
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Váha báze C musí být celé číslo!</font>";
}
}
if (isset($_POST['G-baze']))
{
$baze_g = $_POST['G-baze'];
if (!preg_match('/^-?[0-9]{1,4}$/', $_POST['G-baze']))
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Váha báze G musí být celé číslo!</font>";
}
}
if (isset($_POST['T-baze']))
{
$baze_t = $_POST['T-baze'];
if (!preg_match('/^-?[0-9]{1,4}$/', $_POST['T-baze']))
{
$result_picture = "type=\"image\" src=\"img/false.png\" name=\"mat\" value=\"M\" width=\"30\" height=\"30\"";
$comments = "<font color='red'>Váha báze T musí být celé číslo!</font>";
}
}
?>
<html>
<head>
<style type="text/css">
body {
background: url("img/DNA_acgt.jpg") fixed;
background-position: top right;
background-repeat: no-repeat;
background-size: contain;
}
</style>
<meta charset="UTF-8">
<title>Zpracovani DNA</title>
</head>
<body>
<form enctype="multipart/form-data" method='post'>
<p><h2>Zarovnávání DNA sekvencí převedených na časové řady</h2></p>
<p><h3>Přímý vstup:</h3></p>
<textarea class="FormElement" name="StringInput" id="StringInput" style="height: 3em;"><?php echo $raw_string?></textarea>
<br>
<p><h3>Vstup ze souboru:</h3></p>
<input type="file" name="fileToUpload">
<br><br>
<p><h3>Přesnost výpočtu:</h3></p>
<input type="image" src="img/speed.png" name="mat" value="M" width="50" height="17">
<input type= "text" name="speed" size="2" maxlength="3" value="<?php echo $speed?>">
% <i>(čím větší číslo, tím déle bude výpočet trvat)</i><br>
<p><h3>Váhy jednotlivých bází: <i>(obvykle od -20 do 20)</h3></i></p>
<input type="image" src="img/A-baze.png" name="mat" value="M" width="76" height="17">
<input type= "text" name="A-baze" size="2" maxlength="5" value="<?php echo $baze_a?>">
<br><br>
<input type="image" src="img/C-baze.png" name="mat" value="M" width="76" height="17">
<input type= "text" name="C-baze" size="2" maxlength="5" value="<?php echo $baze_c?>">
<br><br>
<input type="image" src="img/G-baze.png" name="mat" value="M" width="76" height="17">
<input type= "text" name="G-baze" size="2" maxlength="5" value="<?php echo $baze_g?>">
<br><br>
<input type="image" src="img/T-baze.png" name="mat" value="M" width="76" height="17">
<input type= "text" name="T-baze" size="2" maxlength="5" value="<?php echo $baze_t?>">
<br><br>
<input type= "submit" name="run">
<br>
<p><h3>Výsledek:&nbsp;&nbsp;
<input <?php echo $result_picture?>>&nbsp;&nbsp;<i><?php echo $comments?></i>
</h3></p>
<input type="image" src="img/result.ico" name="mat" value="M" width="50" height="17">
<?php
// Tlačítko odeslat bylo zmákčnuto
if (isset($_POST['run']))
{
if (isset($_POST['A-baze']) && isset($_POST['C-baze']) && isset($_POST['G-baze']) && isset($_POST['T-baze']) && isset($_POST['speed']))
{
// Číselné hodnoty v bázích
if (preg_match('/^-?[0-9]{1,4}$/', $_POST['A-baze']) && preg_match('/^-?[0-9]{1,4}$/', $_POST['C-baze']) && preg_match('/^-?[0-9]{1,4}$/', $_POST['G-baze']) && preg_match('/^-?[0-9]{1,4}$/', $_POST['T-baze']) && ctype_digit($_POST['speed']))
{
// Prvně beru přímý vstup = kontroluji pouze výskyt mezery
// TODO mezera - if/else
if (isset($_POST['StringInput']) && $_POST['StringInput'] != '' && strpos($_POST['StringInput'],' ') === false)
{
exec("cd .. && ./prg " . $_POST['A-baze'] . " " . $_POST['C-baze'] . " " . $_POST['G-baze'] . " " . $_POST['T-baze'] . " " . $_POST['speed'] . " " . $_POST['StringInput'], $output, $return_value);
$counter = 0;
foreach ($output as &$value)
{
if ($counter == 0)
{
echo "<span style=\"padding-left:0px\">" . $value . "</span><br>";
}
else
{
echo "<span style=\"padding-left:54px\">" . $value . "</span><br>";
}
$counter++;
}
}
// Pokud není přímý vstup, sleduji, zda je k dispozici soubor
else if ($_FILES['fileToUpload']['tmp_name'])
{
$extension = pathinfo($_FILES['fileToUpload']['name'], PATHINFO_EXTENSION);
// Soubor musí mít příponu ffn
if (1 || $extension == "ffn")
{
$file_content = file_get_contents($_FILES['fileToUpload']['tmp_name']);
exec("cd .. && ./prg " . $_POST['A-baze'] . " " . $_POST['C-baze'] . " " . $_POST['G-baze'] . " " . $_POST['T-baze'] . " " . $_POST['speed'] . " " . $file_content, $output, $return_value);
$counter = 0;
foreach ($output as &$value)
{
if ($counter == 0)
{
echo "<span style=\"padding-left:0px\">" . $value . "</span><br>";
}
else
{
echo "<span style=\"padding-left:54px\">" . $value . "</span><br>";
}
$counter++;
}
}
else
{
echo "<b>Žádný</b>";
}
}
else
{
echo "<b>Žádný</b>";
}
}
else
{
echo "<b>Žádný</b>";
}
}
else
{
echo "<b>Žádný</b>";
}
}
?>
</form>
</body>
</html>
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